PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000517924
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 119aa    MW: 13750.8 Da    PI: 4.9865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000517924genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.64.4e-122347125
                   ---SS-EEEEEEE--TT-SS-EEEE CS
           WRKY  1 ldDgynWrKYGqKevkgsefprsYY 25
                   ldDgy+WrKYGqK+vk+s +pr+ +
  MDP0000517924 23 LDDGYKWRKYGQKVVKNSLHPRAHF 47
                   59********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-13847IPR003657WRKY domain
SuperFamilySSF1182904.18E-111547IPR003657WRKY domain
PROSITE profilePS5081113.4141847IPR003657WRKY domain
SMARTSM007741.5E-52355IPR003657WRKY domain
PfamPF031065.3E-82447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKVRRKLREP RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRAHFGDN LVEPSDMLEL  60
NEMIVPAPIV DFEIGEPESY DFCFLQGAAG LIFEGGFEWI FKEPLGLDVK DECFFKGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117KVRRKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.276962e-39bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6220674e-40HM622067.1 Medicago truncatula STP gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72943245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.16e-27WRKY family protein